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Table 2 Characteristics of the SNPs genotype frequencies (GF) and their associations with COPD risk in different group of subjects

From: Gene susceptibility identification in a longitudinal study confirms new loci in the development of chronic obstructive pulmonary disease and influences lung function decline

Gene

SNP

Position (NCBI)

Genotypes of SNPs

Subjects of 1992

Subjects of 2010

Subjects of Cases from Controls

GF(Cases/Contols)

P

OR(95% CI)

GF(Cases/ Controls)

P

OR(95% CI)

GF(Cases/ Controls)

P

OR(95% CI)

HHIP

rs11100865

145870597

G → A

         
   

GG

0.239/0.284

 

reference

0.229/0.299

 

reference

0.213/0.282

 

reference

   

AG

0.448/0.498

0.166

1.287(0.900-1.841)

0.477/0.492

0.262

1.266(0.838-1.912)

0.525/0.504

0.301

1.382(0.749-2.551)

   

AA

0.313/0.218

0.007

1.715(1.162-2.532)

0.294/0.209

0.001

1.925(1.214-2.687)

0.263/0.214

0.17

1.637(0.809-3.313)

 

rs12504628

145655774

T → C

         
   

TT

0.500/0.506

 

reference

0.519/0.497

 

reference

0.550/0.493

 

reference

   

CT

0.351/0.421

0.383

0.829(0.543-1.264)

0.360/0.430

0.265

0.815(0.569-1.168)

0.375/0.430

0.477

0.829(0.493-1.392)

   

CC

0.149/0.073

0.018

2.114(1.136-3.935)

0.121/0.072

0.116

1.597(0.891-2.863)

0.075/0.074

0.81

0.890(0.436-2.291)

 

rs13118928

145705839

A → G

         
   

AA

0.470/0.457

 

reference

0.495/0.441

 

reference

0.538/0.446

 

reference

   

AG

0.373/0.459

0.298

0.801(0.527-1.217)

0.379/0.474

0.069

0.718(0.502-1.026)

0.389/0.475

0.148

0.685(0.410-1.143)

   

GG

0.158/0.083

0.048

1.839(1.005-3.365)

0.126/0.085

0.317

1.334(0.758-2.348)

0.075/0.079

0.629

0.792(0.309-2.035)

 

rs7654947

145845180

T → C

         
   

TT

0.321/0.417

 

reference

0.327/0.433

 

reference

0.338/0.441

 

reference

   

CT

0.440/0.402

0.112

1.433(0.920-2.235)

0.453/0.387

0.023

1.552(1.062-2.267)

0.475/0.372

0.042

1.750(1.020-3.001)

   

CC

0.239/0.182

0.027

1.820(1.070-3.096)

0.220/0.180

0.004

1.882(1.192-2.816)

0.188/0.166

0.039

1.842(1.201-2.568)

FAM13A

rs7671167

90103002

T → C

         
   

TT

0.313/0.252

 

reference

0.322/0.235

 

reference

0.338/0.224

 

reference

   

CT

0.463/0.442

0.43

0.832(0.527-1.314)

0.463/0.438

0.222

0.779(0.522-1.163)

0.463/0.443

0.426

0.791(0.443-1.411)

   

CC

0.224/0.306

0.046

0.582(0.342-0.990)

0.215/0.327

0.002

0.480(0.303-0.762)

0.200/0.335

0.027

0.458(0.229-0.915)